
The Scottish Government's SIMD map has several useful features, including a transparency slider, several options for colour banding, and comparison of areas.
The Data Visualisation Team at the Office for National Statistics have dozens of well-designed visualisations on their Interactive Content page. The Atlas of Deprivation is entirely SVG-based rather than using a detailed map background. The result is a map that responds very quickly to user interaction. The map has several great features including the option to show a local rather than national comparison. The image here shows ONS's legend design. I based my legend on this. Incidentally, I liked this interview with Alan Smith from the ONS team.
I borrowed a number of ideas for features and page design from the Open Data Communities map of England.

Another New York Times map has place names above the data. This got me thinking about how to make the base map and text as legible as possible. First, I added some transparency options so that the user can choose between brighter colours and a more legible basemap. Secondly, I brightened up the colours (which I got from Colorbrewer) slightly so that they would appear bright even after being made slightly transparent. It didn't make as much difference to the end result as I had hoped, but I can provide the details if anyone would find it helpful.
I really like this map by Oliver O'Brien, which only colour-codes the area occupied by housing, but I'm not skilled enough to do anything similar!
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